Suchard, Marc: search on Z-Library

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1

COVID-19: Epidemiology, Evolution, and Cross-Disciplinary Perspectives

Sun, Jiumeng, He, Wan-Ting, Wang, Lifang, Lai, Alexander, Ji, Xiang, Zhai, Xiaofeng, Li, Gairu, Suchard, Marc A., Tian, Jin, Zhou, Jiyong, Veit, Michael, Su, Shuo

Journal:

Trends in Molecular Medicine

Year:

2020

Language:

english

File:

PDF, 2.61 MB

english, 2020

2

Comprehensive comparative effectiveness and safety of first-line antihypertensive drug classes: a systematic, multinational, large-scale analysis

Suchard, Marc A, Schuemie, Martijn J, Krumholz, Harlan M, You, Seng Chan, Chen, RuiJun, Pratt, Nicole, Reich, Christian G, Duke, Jon, Madigan, David, Hripcsak, George, Ryan, Patrick B

Journal:

Lancet (London, England)

Year:

2019

Language:

english

File:

PDF, 498 KB

english, 2019

3

A Systematic Statistical Approach to Evaluating Evidence from Observational Studies

Madigan, David, Stang, Paul E., Berlin, Jesse A., Schuemie, Martijn, Overhage, J. Marc, Suchard, Marc A., Dumouchel, Bill, Hartzema, Abraham G., Ryan, Patrick B.

Journal:

Annual Review of Statistics and Its Application

Year:

2014

Language:

english

File:

PDF, 4.02 MB

english, 2014

4

Pomegranate Juice and Extracts Provide Similar Levels of Plasma and Urinary Ellagitannin Metabolites in Human Subjects

Seeram, Navindra P., Zhang, Yanjun, McKeever, Rodney, Henning, Susanne M., Lee, Ru-po, Suchard, Marc A., Li, Zhaoping, Chen, Steve, Thames, Gail, Zerlin, Alona, Nguyen, Martha, Wang, David, Dreher, Ma

Journal:

Journal of Medicinal Food

Year:

2008

Language:

english

File:

PDF, 1.86 MB

english, 2008

5

Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10

Suchard, Marc A, Lemey, Philippe, Baele, Guy, Ayres, Daniel L, Drummond, Alexei J, Rambaut, Andrew

Journal:

Virus Evolution

Year:

2018

Language:

english

File:

PDF, 5.29 MB

english, 2018

6

Computational methods for birth-death processes

Crawford, Forrest W., Ho, Lam Si Tung, Suchard, Marc A.

Journal:

Wiley Interdisciplinary Reviews: Computational Statistics

Year:

2018

Language:

english

File:

PDF, 2.29 MB

english, 2018

7

Online Bayesian phylodynamic inference in BEAST with application to epidemic reconstruction

Gill, Mandev S, Lemey, Philippe, Suchard, Marc A, Rambaut, Andrew, Baele, Guy, Rosenberg, Michael

Journal:

Molecular Biology and Evolution

Year:

2020

Language:

english

File:

PDF, 415 KB

english, 2020

8

Assessing the role of live poultry trade in community-structured transmission of avian influenza in China

Yang, Qiqi, Zhao, Xiang, Lemey, Philippe, Suchard, Marc A., Bi, Yuhai, Shi, Weifeng, Liu, Di, Qi, Wenbao, Zhang, Guogang, Stenseth, Nils Chr., Pybus, Oliver G., Tian, Huaiyu

Journal:

Proceedings of the National Academy of Sciences

Year:

2020

Language:

english

File:

PDF, 1.23 MB

english, 2020

9

Pomegranate Juice Ellagitannin Metabolites Are Present in Human Plasma and Some Persist in Urine for Up to 48 Hours

Seeram, Navindra P., Henning, Susanne M., Zhang, Yanjun, Suchard, Marc, Li, Zhaoping, Heber, David

Journal:

Journal of Nutrition

Year:

2006

Language:

english

File:

PDF, 94 KB

english, 2006

10

Determinants of dengue virus dispersal in the Americas

Allicock, Orchid M, Sahadeo, Nikita, Lemey, Philippe, Auguste, Albert J, Suchard, Marc A, Rambaut, Andrew, Carrington, Christine V F

Journal:

Virus Evolution

Year:

2020

File:

PDF, 41.60 MB

2020

11

Development of an Advanced Electrochemical DNA Biosensor for Bacterial Pathogen Detection

Liao, Joseph C., Mastali, Mitra, Li, Yang, Gau, Vincent, Suchard, Marc A., Babbitt, Jane, Gornbein, Jeffrey, Landaw, Elliot M., McCabe, Edward R.B., Churchill, Bernard M.

Journal:

The Journal of Molecular Diagnostics

Year:

2007

Language:

english

File:

PDF, 1.53 MB

english, 2007

12

Comment on Article by Rubio and Steel

Weiss, Robert E., Suchard, Marc A.

Journal:

Bayesian Analysis

Year:

2014

Language:

english

File:

PDF, 169 KB

english, 2014

13

1970s and ‘Patient 0’ HIV-1 genomes illuminate early HIV/AIDS history in North America

Worobey, Michael, Watts, Thomas D., McKay, Richard A., Suchard, Marc A., Granade, Timothy, Teuwen, Dirk E., Koblin, Beryl A., Heneine, Walid, Lemey, Philippe, Jaffe, Harold W.

Journal:

Year:

2016

Language:

english

File:

PDF, 7.05 MB

english, 2016

14

Comparison of Cardiovascular and Safety Outcomes of Chlorthalidone vs Hydrochlorothiazide to Treat Hypertension

Hripcsak, George, Suchard, Marc A., Shea, Steven, Chen, RuiJun, You, Seng Chan, Pratt, Nicole, Madigan, David, Krumholz, Harlan M., Ryan, Patrick B., Schuemie, Martijn J.

Journal:

JAMA Internal Medicine

Year:

2020

File:

PDF, 352 KB

2020

15

Hierarchical models for multiple, rare outcomes using massive observational healthcare databases

Shaddox, Trevor R., Ryan, Patrick B., Schuemie, Martijn J., Madigan, David, Suchard, Marc A.

Journal:

Statistical Analysis and Data Mining

Year:

2016

Language:

english

File:

PDF, 241 KB

english, 2016

16

A surrogate ℓ 0 sparse Cox's regression with applications to sparse high‐dimensional massive sample size time‐to‐event data

Kawaguchi, Eric S., Suchard, Marc A., Liu, Zhenqiu, Li, Gang

Journal:

Statistics in Medicine

Year:

2019

File:

PDF, 1.54 MB

2019

17

Transition probabilities for general birth–death processes with applications in ecology, genetics, and evolution

Forrest W. Crawford, Marc A. Suchard

Journal:

Journal of Mathematical Biology

Year:

2012

Language:

english

File:

PDF, 834 KB

english, 2012

18

Understanding GPU Programming for Statistical Computation: Studies in Massively Parallel Massive Mixtures

Suchard, Marc A., Wang, Quanli, Chan, Cliburn, Frelinger, Jacob, Cron, Andrew, West, Mike

Journal:

Journal of Computational and Graphical Statistics

Year:

2010

Language:

english

File:

PDF, 164 KB

english, 2010

19

Empirical Performance of the Self-Controlled Case Series Design: Lessons for Developing a Risk Identification and Analysis System

Suchard, Marc A., Zorych, Ivan, Simpson, Shawn E., Schuemie, Martijn J., Ryan, Patrick B., Madigan, David

Journal:

Year:

2013

Language:

english

File:

PDF, 803 KB

english, 2013

20

Multiple Self-Controlled Case Series for Large-Scale Longitudinal Observational Databases

Simpson, Shawn E., Madigan, David, Zorych, Ivan, Schuemie, Martijn J., Ryan, Patrick B., Suchard, Marc A.

Journal:

Year:

2013

Language:

english

File:

PDF, 667 KB

english, 2013

21

Massive Parallelization of Serial Inference Algorithms for a Complex Generalized Linear Model

Suchard, Marc A., Simpson, Shawn E., Zorych, Ivan, Ryan, Patrick, Madigan, David

Journal:

ACM Transactions on Modeling and Computer Simulation

Year:

2013

Language:

english

File:

PDF, 385 KB

english, 2013

22

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

Bouckaert, Remco, Heled, Joseph, Kühnert, Denise, Vaughan, Tim, Wu, Chieh-Hsi, Xie, Dong, Suchard, Marc A., Rambaut, Andrew, Drummond, Alexei J., Prlic, Andreas

Journal:

PLoS Computational Biology

Year:

2014

Language:

english

File:

PDF, 707 KB

english, 2014

23

Pseudo-likelihood based logistic regression for estimating COVID-19 infection and case fatality rates by gender, race, and age in California

Xiong, Di, Zhang, Lu, Watson, Gregory L., Sundin, Phillip, Bufford, Teresa, Zoller, Joseph A., Shamshoian, John, Suchard, Marc A., Ramirez, Christina M.

Journal:

Year:

2020

File:

PDF, 2.13 MB

2020

24

Estimation for General Birth-Death Processes

Crawford, Forrest W., Minin, Vladimir N., Suchard, Marc A.

Journal:

Journal of the American Statistical Association

Year:

2014

Language:

english

File:

PDF, 420 KB

english, 2014

25

Toward a quantitative understanding of viral phylogeography

Nuno Rodrigues Faria, Marc A Suchard, Andrew Rambaut, Philippe Lemey

Journal:

Current Opinion in Virology

Year:

2011

Language:

english

File:

PDF, 820 KB

english, 2011

26

The spread of Type 2 Porcine Reproductive and Respiratory Syndrome Virus (PRRSV) in North America: A phylogeographic approach

Shi, Mang, Lemey, Philippe, Singh Brar, Manreetpal, Suchard, Marc A., Murtaugh, Michael P., Carman, Susy, D’Allaire, Sylvie, Delisle, Benjamin, Lambert, Marie-Ève, Gagnon, Carl A., Ge, Li, Qu, Yihan,

Journal:

Year:

2013

Language:

english

File:

PDF, 1.92 MB

english, 2013

27

Graphics Processing Units and High-Dimensional Optimization

Hua Zhou, Kenneth Lange and Marc A. Suchard

Journal:

Statistical Science

Year:

2010

Language:

english

File:

PDF, 2.10 MB

english, 2010

28

Statistical and Computational Challenges in Molecular Phylogenetics and Evolution || Fast, Accurate and Simulation-Free Stochastic Mapping

Vladimir N. Minin and Marc A. Suchard

Journal:

Philosophical Transactions Biological Sciences

Year:

2008

Language:

english

File:

PDF, 1.82 MB

english, 2008

29

Hierarchical Phylogenetic Models for Analyzing Multipartite Sequence Data

Marc A. Suchard, Christina M. R. Kitchen, Janet S. Sinsheimer and Robert E. Weiss

Journal:

Systematic Biology

Year:

2003

Language:

english

File:

PDF, 2.53 MB

english, 2003

30

A Comparison of the Empirical Performance of Methods for a Risk Identification System

Ryan, Patrick B., Stang, Paul E., Overhage, J. Marc, Suchard, Marc A., Hartzema, Abraham G., DuMouchel, William, Reich, Christian G., Schuemie, Martijn J., Madigan, David

Journal:

Year:

2013

Language:

english

File:

PDF, 653 KB

english, 2013

31

Wagner and Dollo: A Stochastic Duet by Composing Two Parsimonious Solos

Alekseyenko, Alexander, Lee, Christopher, Suchard, Marc

Journal:

Systematic Biology

Year:

2008

Language:

english

File:

PDF, 320 KB

english, 2008

32

Bayesian nonparametric clustering in phylogenetics: modeling antigenic evolution in influenza

Cybis, Gabriela B., Sinsheimer, Janet S., Bedford, Trevor, Rambaut, Andrew, Lemey, Philippe, Suchard, Marc A.

Journal:

Statistics in Medicine

Year:

2017

Language:

english

File:

PDF, 514 KB

english, 2017

33

Divergence dating using mixed effects clock modelling: An application to HIV-1

Bletsa, Magda, Suchard, Marc A, Ji, Xiang, Gryseels, Sophie, Vrancken, Bram, Baele, Guy, Worobey, Michael, Lemey, Philippe

Journal:

Virus Evolution

Year:

2019

File:

PDF, 868 KB

2019

34

Gradients do grow on trees: a linear-time ? (N)-dimensional gradient for statistical phylogenetics

Ji, Xiang, Zhang, Zhenyu, Holbrook, Andrew, Nishimura, Akihiko, Baele, Guy, Rambaut, Andrew, Lemey, Philippe, Suchard, Marc A, Townsend, Jeffrey

Journal:

Molecular Biology and Evolution

Year:

2020

File:

PDF, 2.56 MB

2020

35

Pioglitazone Use and Risk of Bladder Cancer

Singh, Sonal, Suchard, Marc A.

Journal:

JAMA The Journal of the American Medical Association

Year:

2015

Language:

english

File:

PDF, 82 KB

english, 2015

36

Understanding Past Population Dynamics: Bayesian Coalescent-Based Modeling with Covariates

Gill, Mandev S., Lemey, Philippe, Bennett, Shannon N., Biek, Roman, Suchard, Marc A.

Journal:

Systematic Biology

Year:

2016

Language:

english

File:

PDF, 585 KB

english, 2016

37

Clearance of Immunodeficiency-associated Vaccine-derived Poliovirus Infection With Pocapavir

Copelyn, Julie, Hincks, Jeffrey R., Wilmshurst, Jo M., Petersen, Wonita, Howard, Wayne, Jallow, Sabelle, Moonsamy, Shelina, Seakamela, Lerato, Suchard, Melinda, Collett, Marc S., Eley, Brian

Journal:

Pediatric Infectious Disease Journal

Year:

2020

File:

PDF, 281 KB

2020

38

Inferring Phenotypic Trait Evolution on Large Trees With Many Incomplete Measurements

Hassler, Gabriel, Tolkoff, Max R., Allen, William L., Ho, Lam Si Tung, Lemey, Philippe, Suchard, Marc A.

Journal:

Journal of the American Statistical Association

Year:

2020

File:

PDF, 1.11 MB

2020

39

Reuse, recycle, reweigh: Combating influenza through efficient sequential Bayesian computation for massive data

Tom, Jennifer A., Sinsheimer, Janet S., Suchard, Marc A.

Journal:

The Annals of Applied Statistics

Year:

2010

Language:

english

File:

PDF, 350 KB

english, 2010

40

Improving reproducibility by using high-throughput observational studies with empirical calibration

Schuemie, Martijn J., Ryan, Patrick B., Hripcsak, George, Madigan, David, Suchard, Marc A.

Journal:

Philosophical Transactions Mathematical Physical & Engineering Sciences

Year:

2018

Language:

english

File:

PDF, 883 KB

english, 2018

41

Analysis of Phylogenetics and Evolution with R. by E. PARADIS

Marc A. Suchard

Journal:

Year:

2007

Language:

english

File:

PDF, 152 KB

english, 2007

42

Pomegranate Ellagitannin-Derived Metabolites Inhibit Prostate Cancer Growth and Localize to the Mouse Prostate Gland

Seeram, Navindra P., Aronson, William J., Zhang, Yanjun, Henning, Susanne M., Moro, Aune, Lee, Ru-po, Sartippour, Maryam, Harris, Diane M., Rettig, Matthew, Suchard, Marc A., Pantuck, Allan J., Bellde

Journal:

Journal of Agricultural and Food Chemistry

Year:

2007

Language:

english

File:

PDF, 157 KB

english, 2007

43

Interplay of chemotaxis and chemokinesis mechanisms in bacterial dynamics

D’Orsogna, Maria R., Suchard, Marc A., Chou, Tom

Journal:

Physical Review E

Year:

2003

Language:

english

File:

PDF, 255 KB

english, 2003

44

Efficiency of Protein Production from mRNA

Suchard, Marc A., Lange, Kenneth, Sinsheimer, Janet S.

Journal:

Journal of Statistical Theory and Practice

Year:

2008

Language:

english

File:

PDF, 288 KB

english, 2008

45

Emerging concepts of data integration in pathogen phylodynamics

Baele, Guy, Suchard, Marc A., Rambaut, Andrew, Lemey, Philippe

Journal:

Systematic Biology

Year:

2016

Language:

english

File:

PDF, 1.69 MB

english, 2016

46

Simultaneously estimating evolutionary history and repeated traits phylogenetic signal: applications to viral and host phenotypic evolution

Vrancken, Bram, Lemey, Philippe, Rambaut, Andrew, Bedford, Trevor, Longdon, Ben, Günthard, Huldrych F., Suchard, Marc A., Freckleton, Robert

Journal:

Methods in Ecology and Evolution

Year:

2015

Language:

english

File:

PDF, 2.66 MB

english, 2015

47

Graphics Processing Units and High-Dimensional Optimization

Zhou, Hua, Lange, Kenneth, Suchard, Marc A.

Journal:

Statistical Science

Year:

2010

Language:

english

File:

PDF, 612 KB

english, 2010

48

Fitting birth–death processes to panel data with applications to bacterial DNA fingerprinting

Doss, Charles R., Suchard, Marc A., Holmes, Ian, Kato-Maeda, Midori, Minin, Vladimir N.

Journal:

The Annals of Applied Statistics

Year:

2013

Language:

english

File:

PDF, 279 KB

english, 2013

49

Phylodynamic assessment of intervention strategies for the West African Ebola virus outbreak

Dellicour, Simon, Baele, Guy, Dudas, Gytis, Faria, Nuno R., Pybus, Oliver G., Suchard, Marc A., Rambaut, Andrew, Lemey, Philippe

Journal:

Nature Communications

Year:

2018

Language:

english

File:

PDF, 7.12 MB

english, 2018

50

A plea to stop using the case-control design in retrospective database studies

Schuemie, Martijn J., Ryan, Patrick B., Man, Kenneth K.C., Wong, Ian C.K., Suchard, Marc A., Hripcsak, George

Journal:

Statistics in Medicine

Year:

2019

Language:

english

File:

PDF, 486 KB

english, 2019

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